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CABRI Guidelines for Catalogue Production

Guidelines prepared for CABRI by BCCM, CBS, CERDIC, DSMZ, ECACC, HGMP, INRC, MSDN
Page layout by CERDIC


Data input & authentication Flat file preparation Flat file submission


Plasmids format and reference list: Agreed list for Selectable phenotype for plasmids

This field should contain the complete "input value" (see left column).
Additional information (e.g. antibioticum concentration) should be entered behind the input value, separated by a space.

To be indexed by CABRI, and as such searchable: each single term of the input value

The thesaurus file containing the thesaurus values must be implemented in the same way as the synonym file for the "Name" field in e.g. the bacteria catalogues.

Input value

Thesaurus value

2,4-dichlorophenoxy acetic acid production 2,4-D
3-chlorobenzoic acid production 3-CBA
Acetamidase production amdS
Acriflavine resistance Ac
Aerobactin siderophore production Aer
Amikacin resistance Ak
Ampicillin resistance

amp; bla; carb; Ap; Cb; beta-lactamase; carbenicillin; triacillin

Antimony resistance Amo; Sb
Apramycin resistance Apr
Arginine B synthesis

arg; argB; ornithine carbamoyl transferase

Arsenate resistance Asa
Arsenite resistance Asi
Autonomously replicating sequences ARS
Bacteriocin production Bcn
Bismuth resistance Bi
Bleomycin resistance bleo; phleo; zeo; phleomycin; zeomycin; zeocin
Borate resistance Bor
Cadmium resistance

Cd

Centromeric DNA regions

CEN

Chloramphenicol resistance cam; cat; cml; chl; Cm
Chromosome mobilising ability

Cma

Citrate utilization

Cit

Colicin E1 immunity

ColE1

Colicin production

Col; ColA

Derepressed mutant

drd

DNA gyrase subunit A(nal)

gyrA; Nal

DNA-specific endonuclease I

endA

Erythromycin resistance ery; erm; ero; Em
Filamentous phage inhibition (tolerance to Class A colicins)

tolQ

Fusidic acid resistance

Fa

Galactose utilization

Gal

Gentamycin resistance Gm
Heat stable enterotoxin production

ST

Histidine synthesis his, HIS3
Histidine-requiring

his

Host (E.coli B) restriction system absent

rB-

Host (E.coli B) restriction-modification absent

mb-

Host (E.coli K) restriction system present

rK+

Host (E.coli K) restriction-modification present

mK+

Host specificity determinant

hsd

Host specificity I

HspI

Host specificity II

HspII

Hygromycin resistance

hyg

Inability to photoreactivate

phr

Inability to repair Uv damage

uvr

Inability to utilize arabinose

ara

Inability to utilize galactose

gal

Inability to utilize lactose

lac

Inability to utilize maltose

mal

Inability to utilize mannitol

mtl

Inability to utilize melibiose

mel

Inability to utilize xylose

xyl

Isoleucine-requiring

ile

Isoleucine-valine requiring

ilv

Kanamycin resistance kan; Km; neo; Nm
Lactose utilization Lac
Lambda lysogen

lambda+

Lambda phage absent

lambda-

Lead resistance

Pb

Leucine synthesis

leu, LEU2; leu2-d

Leucine-requiring

leu

Lysine decarboxylation

Ldc

Lysine synthesis lys; LYS2
Lysine-requiring

lys

Mercuric ion resistance

Hg

Methionine-requiring

met

Methotrexate resistance MTX
Mobilisation proficiency

mob

Nalidixic acid resistance

nal

Natural isolate (wild type)

wt

Neomycin resistance neo; Nm; kanamycin; kan; Km; G418
ompC/F regulation

ompR

Organomercurial resistance

Om

Pyrimidine synthesis Orotidine 5’-phosphate decarboxylase; pyr4; URA3; uracil
Outer membrane protein 1a

ompF

Outer membrane protein 3a

ompA

Penicillin resistance

Pc

p-fluorophenylalanine sensitivity

phes

Phenylmercuric acetate resistance

Pmr

Proline-requiring

pro

Propamidine isothionate resistance

Pi

Prototrophic growth requirements
Recombination deficient

recA

Relaxed

relA

Rifampicin resistance

rif; rpoB

Sex-factor or Hfr absent

F-

Sex-factor or Hfr present

F+

Silver resistance Ag
Spectinomycin resistance Sp
Streptomycin resistance str; Sm; rpsL
Sucrose inducable levansucrase production sacB
Sucrose utilization*4

Suc

Sulphonamide resistance Su
Suppression of amber mutations sup; supE, supF
T1 & colicin sensitivity

tonB

T1/colicin M receptor

fhuA

T6, colicin K receptor

tsx

Tellurate & Tellurite resistance

Te

Temperature sensitive

ts

Tetracycline resistance tet; Tc
Thermosensitive replication

Rep/ts

Thiamine-requiring

thi; vitamin B1

Thiostrepton resistance

Tsr

Threonine-requiring

thr

Thymidine kinase production TK
Thymine-requiring

thy

Tobramycin resistance

Tm

Transfer proficiency

tra

Trimethoprim resistance

Tp

Tryptophan synthesis

trp; TRP1; N-(5'-phosphoribosyl)-anthranilate isomerase

Tryptophan-requiring

trp

Ultraviolet resistance

Uv

Valine-requiring

val

Xanthine-guanine phosphoribosyl transferase production

XGPRT

 
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Site maintained by Paolo Romano. Last revised: February 2023.